[SOLVED] 601-Project 1 

A          NEW    data     set       (pca_demo.txt)           has      been    posted on        Piazza  (under resource          project1).        The      data            format is          the       same   as         the       ones    we       already            provided         (but     with     different          numbers          of            rows/columns).

Please  bring    the       following         items   to         Demo:

• A hard    copy    of         your
• Your Including         your     runnable         code    implementaKon,         the       downloaded    new     dataset      (pca_demo.txt,           making sure     your     code    can      read     it          correctly).
• Your UB

Complete        the       following         tasks,   and      show   your     results during demo   (please do        NOT     include these   results in         your            report).

1. Run your Dimensionality            ReducKon        methods          (PCA,   t-SNE   and      SVD)    on        new     dataset (pca_demo.txt).

Please  show:

1. PCA source code    and      visualizaKon    results on        new
2. t-SNE and      SVD     visualizaKon    results on        new
3. Run your AssociaKon      Analysis           implementaKon          on        gene    expression       dataset            with     new     queries. For       example,         set       the       support           value   to         60%     and      confidence      value   to         65%,    then    answer the query:

asso_rule.template3(“1or2”, “BODY”, “ANY”, [‘G1_Down’], “HEAD”, 2)          Note    that     these   parameters     and      template            will      be        changed          during demo.

Please  show:

1. AssociaKon Rule     results (including        rules    and      the       number           of         rules)   for       new
2. AssociaKon Rule     source
3. You will      be        asked   several quesKons        to         test      your     understanding about  above  methods.

Please  note:

1. The   demo   is          divided into      three   parts:
2. Check Dimensionality            ReducKon        methods          ;
3. Check AssociaKon      Analysis           method;
4. Answer project-related

2. During the demo,  some   quesKons        will      be        asked   to         verify   your     understanding about  the       tested  Your    final     score   is          based  on        your     report, your     submi‘ed         code,   your     demo   and      your     answers           to those   quesKons.       Please  make   sure     that     your     results in         the       report  and      shown in         the       demo   part     can be        reproduced     by        your     submi‘ed         code,   or        you      may     lose     points.
3. Each group  only     has      5          minutes          to         finish   each    part     of         the         We      will      STOP   the demo   part     once    Kme     is          up.       Do       not      be        late      and      make   sure     your     code    can      run      smoothly. We      will      NOT     give     extra    Kme.
4. You should not reveal the questions you are asked during your demo to other
 If we find this, we will give ZERO score for this project to all the members in your group and the groups that receive the information.R